PACSY-ALIGN Instructions

PACSY-ALIGN is a web server that provides useful information for efficient protein 3D structure determination.

It finds ten closest entries to your protein in the Protein Data Bank, analyzes structural properties, generates 3D-NOESY assignments.

The NOE assignments can be refined by new “Label” function in the Read Peak List window (two-letter-code: rp) of NMRFAM-Sparky. Distance constraints generated from the assignments (two-letter-code: gd or xf) and angle constraints from PACSY-ALIGN are already good for calculating your structure. Also, they guide automated NOE assignments in PONDEROSA-C/S and CYANA by providing global fold information from homologous relatives.

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Output Files:

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