Alignment results towards PDB


In PACSY-ALIGN result, there will be ten subdirectories including analysis_report.txt, match_report.txt and cartoon.png files (#_PDB_CHAIN; e.g. /1_2LN3_A).


* analysis_report.txt

This file reports structural property analysis of the homologous protein. Secondary structure (SSS) and solvent accessible surface area (SAS) is determined by STRIDE. Hydrophocity is calculated by SAS divided by (SAS of GXG from Lee & Richards).


RESI

RESN

SSS

SSA

Hydrophobicity (%)

PHI

PSI

1

MET

C

205.700

100

360.000

150.110

2

GLY

C

47.700

65.118

148.820

155.860

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* match_report.txt

This file provides sequence and secondary structure alignment in detail.


* cartoon.png

This picture is cartoon representation of the aligned PDB structure.