Download and Install ADAPT-NMR on Varian Machines



To install ADAPT_NMR follow these steps:

1) Download and save the ADAPT-NMR package (adapt.tar) file onto your computer (e.g. on your home directory: /home/marco)

2) cd to your vnmrsys directory    (e.g. cd /home/marco/vnmrsys)

3) Run the untar command from within this directory (e.g. tar xvf /home/marco/adapt.tar)

4) Go to psglib directory and compile the pulse programs (e.g. cd /home/marco/vnmrsys/psglib ; seqgen NEW*)

5) Go to adapt_nmr/libraries directory and install the MATLAB libraries - this will take a few minutes

  (e.g. cd /home/marco/vnmrsys/adapt_nmr/libraries  ;  and then Follow the instruction in install.txt)

6) Go to input_files directory (e.g. cd /home/marco/vnmrsys/adapt_nmr/input_files) and update the first two lines of parameters.txt file as follows:

               -adapt_home       : should be the directory where adapt_nmr was installed, e.g.: /home/marco/vnmrsys/adatpt_nmr

               -nmrpipe_source   : should point to the NMRPipe source file required to run NMRPipe (it comes with NMRPipe)

7) Follow instructions in strategy.README in the input files directory to run ADAPT_NMR. Also, a full description of input files and output files has been provided in the website. 


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