Markley, Arash Bahrami, Hamid R. Eghbalnia,
Francis C. Peterson, Robert C. Tyler, Eldon L. Ulrich, William M. Westler, and Brian F. Volkman,
“Macromolecular Structure Determination by NMR Spectroscopy”
In /Structural Bioinformatics/, 2nd Ed., J. Gu, and P. Bourne eds., John Wiley,
pp. 93-142 (2009).
Arash Bahrami, John
L. Markley, Amir Assadi, and Hamid R. Eghbalnia, Probabilistic
Interaction Network of Evidence Algorithm and its Application to Complete
Labeling of Peak lists from Protein NMR Spectroscopy, PLoS
Comput Biol. 2009 Mar;5(3):e1000307.
William M. Westler, Arash Bahrami, Hamid
R. Eghbalnia, and John L. Markley, PINE-SPARKY: graphical interface for
evaluating automated probabilistic peak assignments in protein NMR
Journal of Bioinformatics, 2009 Jun.
Gabriel Cornilescu, Arash Bahrami, Marco Tonelli, John L.
Markley, and Hamid R. Eghbalnia, HIFI-C: a robust and fast method for
determining NMR couplings from adaptive 3D to 2D projections,
Biomolecular NMR. 2007 Aug; 38(4):341-51.
Nicholas J. Reiter,
Donghan Lee, Yun-Xing Wang, Marco Tonelli, Arash Bahrami,
Claudia C. Cornilescu, and Samuel E. Butcher, Resonance assignments for
the two N-terminal RNA recognition motifs (RRM) of the S. cerevisiae Pre-mRNA
Processing Protein Prp24,
Biomolecular NMR. 2006; 36 Suppl 1:58.
Eghbalnia, Arash Bahrami, Liya Wang,
Amir Assadi, and John L. Markley. "Probabilistic identification of spin
systems and their assignments including coil–helix inference as output
Journal of Biomolecular NMR,2005 July;32(3):219-233.
Marco Tonelli, Robert C. Tyler, Arash Bahrami,
Min S. Lee, and John L. Markley
"Three-dimensional structure of the AAH26994.1 protein from Mus
musculus, a putative eukaryotic Urm1"
Protein Science, 2005 August; 14: 2095 - 2102.
Eghbalnia, Liya Wang, Arash Bahrami,
Amir Assadi, John L. Markley, "Protein energetic conformational
analysis from NMR chemical shifts (PECAN) and its use in determining secondary
Journal of Biomolecular NMR,2005 May;32(1):71-81.
Hamid R. Eghbalnia, Arash Bahrami, John
L. Markley, "Linear analysis of carbon-13 chemical shift differences
and its application to the detection and correction of errors in referencing
and spin system identifications",
Journal of Biomolecular NMR, 2005 May;32(1):13-22.