The sequence file
includes the sequence of the RNA and optional base pairing
information. The first column is the nucleotide number (index), the
second column is the typing (A, C, G, U), and the third column is
optional base pairing information. We recommend leaving the
third columns as zero unless you want to enforce a particular base
pairing. In the later case you can follow the same format as described
in secondary structure format.
1 G
0
2 U 0
3 U 0
4 C 0
5 G 0
6 C 0
7 G 0
8 A 0
9 A 0
10 G 0
11 U 0
12 A 0
13 A 0
14 C 0
15 C 0
16 C 0
17 U 0
18 U 0
19 C 0
20 G 0
21 U 0
22 G 0
23 G 0
24 A 0
25 C 0
26 A 0
27 U 0
28 U 0
29 U 0 
