PINE Server v.2.0

 

Bahrami, A., Assadi, A., Markley, J. L. & Eghbalnia, H., Probabilistic Interaction Network of Evidence Algorithm and its Application to Complete Labeling of Peak lists from Protein NMR Spectroscopy, PLoS Comput Biol. 2009 Mar;5(3):e1000307.

 

PINE accepts, as input, the sequence of the protein plus peak lists (or spin systems) from a variety of NMR experiments and offers automatic backbone and sidechain assignments, detection and automated correction of potential referencing problems or inconsistent assignments and secondary structure determination.



A service offered by the National Magnetic Resonance Facility at Madison. Updated JULY 2014.









OPTIONAL: Prot_file, Pre-assignment, Selective_Labeling, Spin_Systems

Upload the empty Prot_file IF you want the output in Xeasy format (peak assigned according to prot file numbers). (Sample)
Upload the Pre-assignment file in BMRB format if any pre-assignment is available. DO NOT UPLOAD IF THE FILE IS EMPTY. (Instruction)
Upload the Selective_Labeling information file if available. (Instruction)
Upload your Spin_Systems here if you already made spin systems. Do NOT upload spin systems and peak lists together! (Instruction)
















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